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社群媒體上有些相關的討論：

raxml ng conda 在 Package Recipe 'raxml-ng' — Bioconda documentation 的推薦與評價

RAxML Next Generation: faster, easier-to-use and more flexible. Homepage: https://github.com/amkozlov/raxml-ng. License: ... conda install raxml-ng. ... <看更多>

raxml ng conda 在 Request for informative errors + raxml-ng: /opt/conda ... - GitHub 的推薦與評價

Hi, I've been using raxml-ng 0.9 on ParGenes on a cluster for multiple data-sets. While fast and convenient, I often run into errors that are ... ... <看更多>

raxml ng conda 在 How to Install RAxML using Anaconda - YouTube 的推薦與評價

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This tutorial shows you how to install RAxML using AnacondaInstalling RAxML using the source code https://youtu.be/i5yOPNO6CPsInstall Anac. ... <看更多>

raxml ng conda 在 lab03_phylo.ipynb - Colaboratory - Google Colab 的推薦與評價

RAxML -ng, a phylogenetic tree inference tool which uses ... Finally, we will install conda to be able to install RAxML-NG and ModelTest-NG as follows:. ... <看更多>

raxml ng conda 在 GitHub Issue: "Please install the latest version of the database 的推薦與評價

... conda-forge libgcc-ng 9.2.0 h24d8f2e_2 conda-forge libgfortran-ng ... conda-forge pytz 2020.1 pyh9f0ad1d_0 conda-forge raxml 8.2.12 ... ... <看更多>

你可能也想看看
raxml-ng tutorial
conda modeltest ng
raxmlhpc
conda install iqtree
raxml github
raxml manual
raxml command line
搜尋相關連結

#1. Raxml Ng - :: Anaconda.org

RAxML Next Generation: faster, easier-to-use and more flexible. Conda · Files · Labels · Badges. License: AGPL-3; Home: https://github.com/amkozlov/raxml-ng ...

#2. Package Recipe 'raxml-ng' — Bioconda documentation

RAxML Next Generation: faster, easier-to-use and more flexible. Homepage: https://github.com/amkozlov/raxml-ng. License: ... conda install raxml-ng.

#3. Request for informative errors + raxml-ng: /opt/conda ... - GitHub

Hi, I've been using raxml-ng 0.9 on ParGenes on a cluster for multiple data-sets. While fast and convenient, I often run into errors that are ...

#4. RAxML-NG - Docs

RAxML -NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. Its search heuristic is based on iteratively performing ...

#5. pargenes installation fails - Google Groups

RAxML -NG doesn't seem to find MPI correctly (line 93), but other programs find it (line 21) and compile fine. Any idea of what could cause that? Best,. Benoit.

#6. How to Install RAxML using Anaconda - YouTube

This tutorial shows you how to install RAxML using AnacondaInstalling RAxML using the source code https://youtu.be/i5yOPNO6CPsInstall Anac.

#7. RAxML-NG、IQtree】的安装和使用（2021.3.16更新） - 简书

6-【FasTtree、RAxML-NG、IQtree】的安装和使用（2021.3.16更新） · 3.12更新说明：ML建树对与模型的替代选择比较敏感，因此增加了第四部分推测最佳模型的 ...

#8. nanozoo/raxml-ng Dockerfile - Docker Hub

... conda-forge && \ conda config --add channels bioconda && \ conda config --add channels default RUN conda install raxml-ng=$VERSION && conda clean -a.

#9. 9. Orthology and Phylogeny - Computational Genomics Tutorial

We will also install RAxML-NG, a phylogenetic tree inference tool, which uses maximum-likelihood (ML) optimality criterion. However, there is no conda ...

#10. MerR super family金屬結合蛋白之親緣關係分析 - NTU HPC

所屬單位：生科系. 研究團隊：周信宏. 計畫主持人：周信宏. 研究人員：李子源. 資源需求：Python, RaxmL-ng, upp, conda, modeltest-ng. 使用期間：2021/12~.

#11. RAxML - The Exelixis Lab

New RAxML citation. When using RAxML please cite the following paper: A. Stamatakis: "RAxML Version 8: A tool for Phylogenetic Analysis and Post-Analysis of ...

#12. ab12phylo - PyPI

conda install -c bioconda "blast>=2.9.0" raxml-ng "gblocks=0.91b" mafft clustalo muscle t-coffee. Mind that some of these tools are not ...

#13. Installation — phyluce 1.7.2 documentation - Read the Docs

We do not support installing phyluce through means other than the conda installer. ... pilon:$CONDA/bin/pilon raxml-ng:$CONDA/bin/raxml-ng ...

#14. 無題

Name Description Versions bedtools A powerful toolset for genome arithmetic 2.26.0, 2.27.1, 2.29.2 bio‑vcf Smart VCF parser bio‑vcf‑0.9.2 0.9.2, 0.9.2 bowtie An ultrafast memory‑efficient short read aligner 1.2.2, 1.2.3

#15. lab03_phylo.ipynb - Colaboratory - Google Colab

RAxML -ng, a phylogenetic tree inference tool which uses ... Finally, we will install conda to be able to install RAxML-NG and ModelTest-NG as follows:.

#16. Linux 生信软件安装和使用 - 知乎

不知道为什么使用conda安装，总是报错，只能一步步安装1. 创建conda环境conda create -n funannotate ... 系统发育为什么Raxml仅仅有GTR模型，而Raxml-ng有很多模型？

#17. Bioinformatics Software and Modules - SI Collaboration WIKI

Software Version Module ANGSD 0.931 bioinformatics/angsd/0.931 assembly‑stats 0.1.3 bioinformatics/assembly‑stats/0_1_3 Augustus 3.3.2 bioinformatics/augustus/3.3.2

#18. bactmap » nf-core

--raxmlng. type: 'boolean'. Build a tree using the RAxML-NG ML algorithm ... --enable_conda. type: 'boolean'. enable conda rather than use containers ...

#19. AB12PHYLO - bioRxiv

AB12PHYLO. vii) With RaxML-NG or IQ-tree, bootstrap replicates are generated from the ... conda package-managment systems, the latter also allowing easy ...

#20. 6-【FasTtree、RAxML-NG、IQtree】的安装和使用 ... - 百度文库

6-【FasTtree、RAxML-NG、IQtree】的安装和使用（2021.3.16更新）-1. ... RAxML-NG 3.1 安装 conda install -c bioconda raxml-ng 1. 系统发生树 1.1 简述

#21. Fasttree下载_m0_60548105的博客

conda install -c bioconda fasttree_fasttree. ... raxml linux 使用方法,6-【FasTtree、RAxML-NG、IQtree】的安装和使用（2021.3.16更新）.

#22. What does it mean that a bootstrapping test did not converge ...

!raxml-ng --bsconverge --bs-trees T2.raxml.bootstraps --prefix Test --threads ... (I have WSL in my windows) I should use or are there any conda packages ?

#23. Conda — WVU-RC 2023.04.03 documentation

Conda as a package manager helps you find and install packages. ... libffi-3.2.1 | hd88cf55_4 40 KB libgcc-ng-9.1.0 | hdf63c60_0 5.1 MB libgfortran-ng-7.3.0 ...

#24. Using Bioinformatics Tools (Blast, BWA, etc.)

... alignment & phylogenetic inference, MAFFT, IQ-TREE2, raxml-ng ... To see a full list of software installed under each conda module, ...

#25. a collection of workflows to benchmark phylogenetic placement

its dependencies are easily installed via a conda virtual environment. ... a majority of PP uses: EPA(RAxML), PPlacer, EPA-ng, RAPPAS and.

#26. ifb softwares - HPC - Université de Strasbourg

"Origin: Conda packages" "Description: Raven is an assembler for raw reads generated by the third generation sequencing." raxml-ng, "Origin: Conda packages" " ...

#27. BioHPC Cloud: User Guide - CBSU

The biobakery software need to be install by yourself through Conda. 1. Install miniconda3 if you have not done so.

#28. COLSA Premise Usage UNH Logo

The Anaconda installation on Premise accommodates both system-wide and ... RAxML-NG 1.0.1 (raxmlng-1.0.1) -- Phylogenetic tree inference tool using ...

#29. 【SNP 解析】ML系統樹作成 - Gai memo - はてなブログ

使ったソフトー ・系統樹の描画 RAXML-NG (GitHub ... のでやってくれるはずなんですけど、このソフトウェアはconda installが利かない（2020/12/27 ...

#30. 無題

"-f N": … raxml -ng mean raxml : Maximum Likelihood Tree Estimation with RAxML ... Raxml :: Anaconda.org WebWe use RAxML-NG (formerly RAxML or ExaML) to ...

#31. dlopen and PluginManager errors on conda activation (2022.11)

mamba --version mamba 1.3.0 conda 22.11.1 $ uname -a Linux micro-109 ... h3b97bd3_19 conda-forge libgcc-ng 12.2.0 h65d4601_19 conda-forge ...

#32. Software - CRC Documentation

anaconda /4.10, None. anaconda/4.7, None. angsd/0.934, None. ansysem/21.1, None ... raxml-ng/0.9.0, None. raxml/8.2.12, None. repeatmasker/4.0.9, None.

#33. Online Phylogenetics using Parsimony Produces ... - NCBI

We first compared matOptimize (commit 66ca5ff, conda version 0.4.8) (), IQ-TREE ... RAxML-NG is a maximum likelihood approach that uses SPR moves to search ...

#34. Prospecting for Zoonotic Pathogens by Using Targeted DNA ...

These files along with conda v4.11.0 environments are available ... RaxML-NG v1.0.1 to generate phylogenies from each pathogen group of interest.

#35. Current Users - Installed Software - NIU - Center for Research ...

4. Python modules. We allow user-level installation of the python modules via pip3 and conda managers. ... RAxML-NG/0.5.0beta SeqGen/1.3.3. Shelx/2015

#36. PGCGAP

$conda create -n pgcgap python=3 $conda activate pgcgap $conda install pgcgap (Users ... Replaced Modeltest-ng and Raxml-ng with IQ-TREE (module CoreTree, ...

#37. 转载]orthofinder构建单拷贝基因发育树——相关命令参数

一、1、conda activate orthofinder #激活进入orthofinder, ... msa时才有效，（默认= fasttree）可选：iqtree，raxml-ng，fasttree，raxml（推荐）.

#38. Software - sciCORE

... Queue R-bundle R-bundle-Bioconductor RAD RADtools RAxML RAxML-NG RDKit RDP-Classifier RECON RELION RMBlast RNA-QC-Chain RNA-SeQC RNA-SeQC-Python RNASkim ...

#39. AKX - 博客园

2021-04-27 update: 更新了提供conda镜像的大学的列表2021-04-13 更新预告: ... 2019-06-12 update：最近在装raxml-ng的时候发现了一个新的channel ...

#40. faircloth-lab Documentation

Create a pacbio environment for conda (after installing miniconda and ... We use RAxML-NG (formerly RAxML or ExaML) to infer maximum ...

#41. Installed Application Software and Libraries - HPC users

PyTorch, 1.13.1, conda, 17/02/2023 ... RAxML-NG/1.1.0-GCC-8.3.0; RAxML-NG/1.1.0-GCC-8.3.0-OpenMPI; RAxML-NG/1.1.0-GCC-8.3.0-MPI-enabled ...

#42. ab12phylo-0.5.9b0 - مخزن ملی منابع متن باز

Installation AB12PHYLO can be installed using conda or pip: ```shell script conda install ... Trees are re-constructed using either RAxML-NG or IQ-Tree 2, ...

#43. reproducible and scalable data analysis on high performance

with a conda package manager, automatic deployment, and ability to specific software ... maximum-likelihood phylogenetic tree (RAXML-NG, FASTTREE).

#44. Instalando Aplicações — documentação GridUnesp

Aqui, anaconda3 é o nome do módulo que carrega o ambiente Conda (já instalado no ... intel/compilers/2017(default) raxml-ng/1.0.3(default) cmake/3.20.0-rc3 ...

#45. GitHub Issue: "Please install the latest version of the database

... conda-forge libgcc-ng 9.2.0 h24d8f2e_2 conda-forge libgfortran-ng ... conda-forge pytz 2020.1 pyh9f0ad1d_0 conda-forge raxml 8.2.12 ...

#46. conda的安装与使用（2019-6-12更新） - 简书

有很多的生信软件都可以通过conda安装，省去了很多的安装、修bug的烦恼。 ... 2019-6-12 update：最近在装raxml-ng的时候发现了一个新的channel叫genomedk，各位也可以 ...

#47. bpucker/MYB_annotator - BioInfToolServer

... conda install -c bioconda hmmer ). FastTree ( sudo apt-get install -y fasttree ) and/or RAxML-NG (precompiled binaries recommended) ...

#48. Problem installing a git tool : libhts, libbzip2-dev missing

... raven-assembler/1.4.0 bowtie2/2.3.5 kodoja/0.0.10 raxml-ng/0.9.0 ... But the good news, is that we have conda and singularity installed, ...

#49. HAPHPIPE: Haplotype Reconstruction and Phylodynamics for ...

RAxML -NG includes a variety of options on reconstructing trees for both ... through the package manager Conda and the channel Bioconda, ...

#50. Build a Bioinformatics Analysis Platform and Apply it to ...

RAxML -NG19 were used to construct the SNPs phylogenetic tree (Supplementary Figure S9). ... $conda con g --add channels conda-forge.

#51. Tutorial: Installing paprica on Mac OSX - The Bowman Lab

Install Infernal, pplacer, and epa-ng ... Install gappa via conda, instead of compiling on your own (it does not need OpenMp): ...

#52. Centos 下Miniconda的安裝與使用 - 台部落

2019-6-12 update：最近在裝raxml-ng的時候發現了一個新的channel叫genomedk，各位也可以添加到condarc裏去 conda config --add channels genomedk.

#53. 無題

Metagenomics - Install RAxML WebAug 15, 2016 · raxmlHPC-HYBRID -T 4 -f a -N ... RAxML-NG Introduction and Laboratory - HITS gGmbH RAxML - Docs CSC WebJan 4, ...

#54. OrthoFinder寻找同源基因并建树（1） - 多啦A梦的时光机

$conda install -y orthofinder ... raxml-ng, fasttree, raxml -s <file> User-specified rooted species tree -I <int> MCL inflation parameter ...

#55. Perform phylogenetic analyses (command line) - Google Sites

brew install raxml-ng. brew install git cmake libtool automake. git clone --recursive https://github.com/ddarriba/modeltest. cd modeltest.