疑難雜症萬事通 - 關於 cpanm conda ，我們在網路上蒐集到這些相關的討論、資訊與評價

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conda install. linux-64 v1.7044; osx-64 v1.7044. To install this package with conda run one of the following: conda install -c bioconda perl-app-cpanminus

#2. Unable to install perl modules via cpanm in conda environments

I can try answer the first part of the question: How to use the correct perl when installing packages in the conda environment.

#3. Using cpanm to Install Perl Modules in a Conda Environment

This post explains how you can use cpanm (App::cpanminus) to install Perl modules in a conda environment when they are not available in a ...

#4. Cannot install cpan module inside conda · Issue #8425 - GitHub

2019年3月18日 — I cannot install modules using cpanm inside conda. conda install -c bioconda perl-app-cpanminus cpanm --force Math::CDF --> Working on ...

#5. Installing Perl modules - HCC-DOCS

module load anaconda conda create -n myperl perl perl-app-cpanminus ... modules can be installed via cpan or cpanm with no special configuration needed.

#6. 【Perl】如何安装Bioperl模块？ - Bioinfarmer - 博客园

失败尝试一：使用cpanm. 有两个方法，一是直接用conda，简单。 conda install -c conda- ...

#7. Results for "perl" - BOL

...oconda if you need tools # for bioinformatics) conda config --add channels conda-forge # Install cpanm conda install perl-app-cpanminus # packagename is the ...

#8. Conda 安装perl 模块, 康达安装bioperl, 康达安装CPAN, Perl ...

要使用conda 安装此软件包，请运行以下命令之一： conda install -c bioconda perl-cpan-shell conda 。在Conda 环境中使用cpanm 安装Perl 模块. 康达安装。linux-64 v0.

#9. how to use cpanminus to install modules Code Example

curl -L https://cpanmin.us | perl - --sudo App::cpanminus. ... Install xlrd >= 1.0.0 for Excel support Use pip or conda to install xlrd. install tkinter ...

#10. Conda and Bioconda - Bootcamp

conda install -c anaconda perl # Installing perl. • conda install -c bioconda perl-app-cpanminus # Installing CPAN for managing perl modules.

#11. Conda mediated Installation - Funannotate

... perl-carp perl-soap-lite perl-class-inspector perl-app-cpanminus #if you are going to use remote search also need LWP module (not on conda) cpanm LWP.

#12. Package Recipe 'perl-statistics-r' — Bioconda documentation

With an activated Bioconda channel (see 2. Set up channels), install with: conda install perl-statistics-r. and update with: conda update perl-statistics-r.

#13. Bioconda · Doc

bioconda 就是一个conda中专门用来提供生信软件的channel，提供有超过7000个的生信 ... conda install -c bioconda perl perl-app-cpanminus cpanm GD::Graph cpanm ...

#14. Failing to install VEP dependencies - Biostars

Can't write to cpanm home '/Users/michaelflower/.cpanm': You should fix it with chown/chmod ... When you can always use conda to install.

#15. 【Perl】如何安装Bioperl模块？ - 简书

conda install -c conda-forge perl-app-cpanminus. 二是用系统自带的perl安装和配置local::lib和cpanm。这个详见徐州更的博文：如何安装perl模块.

#16. conda安裝包及設置鏡像源等命令- 人人焦點

安裝包：conda install packagename#也可以安裝多個包：conda installl numpy pandas ... 這些包可以通過cpanm（建議）下載安裝sudo apt-get perlbrew ...

#17. 在Linux(CentOS/Ununtu)中安装Circos - 生物知识学习

wget http://xrl.us/cpanm --no-check-certificate -O /sbin/cpanm && chmod +x /sbin/ ... 如果你安装过conda，可以使用conda 安装circos（仅适用与CentOS下）：

#18. CPAN 安装, Perl 安装JSON, CPAN 安装依赖项, Cpanm, 找不 ...

linux-64 v4.02；osx-64 v4.02。要使用conda 安装此软件包，请运行以下命令之一： conda install -c bioconda perl-json conda install -c 要安装JSON，请将相应的命令复制 ...

#19. funannotate 真菌基因组基因结构和功能注释 - 知乎专栏

不知道为什么使用conda安装，总是报错，只能一步步安装Annotation Databases1. ... 再一次check，如果还缺少模块，使用cpanm或conda 进行安装，.

#20. conda install怎么用_[Python]Anaconda安装和使用指南

... myEnv # 安装perl和cpan conda install-c bioconda perl perl-app-cpanminus # 安装perl相关库cpanm My::Module 最后介绍通过conda安装生 ...

#21. conda-forge/conda-forge.github.io - Gitter

Should I ignore it, and as the package in cpanm separately to conda-forge (e.g. as cpanm-yaml::tiny ), or is there a way to piggyback on cpanm ?

#22. Conda - wiki

cpan App::cpanminus cpanm Term::ReadKey. Bioperl is difficult to install. Fact. But someone has put this in coda. So lets use that: conda ...

#23. conda-forge feedstocks | community driven packaging for conda

packages on conda-forge ... perl-app-cpanminus: perl-app-cpanminus-feedstock · perl-file-temp: ... conda-ecosystem-user-package-isolation-feedstock ...

#24. Installing ClusTRace | ClusTRace | University of Helsinki

conda create -n clustrace -c bioconda iqtree mafft jvarkit-msa2vcf pangolin ... cpanm --local-lib=~/perl5 Bio::SeqIO Bio::TreeIO Clone ...

#25. Using Anaconda on the Tufts HPC

Customizing conda defaults so you don't fill up your home directory ... cpanm htseq mummer pkgs rnaseq_course samtools test umap-learn.

#26. Python: How to install additional packages - WWU Confluence ...

A note on Anaconda/Miniconda ... Conda provides not just Python packages but includes various other ... Install the module using the cpanm command:.

#27. Image Layer Details - meren/anvio:6.2 - Docker Hub

ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/ ... /bin/sh -c conda config --env ... /bin/bash -c cpanm --self-upgrade --sudo.

#28. Conda Tutorial - CGRB Analyst Blog

Let's say we want to use a new install of perl in our conda environment. We would want to clear any custom PERL5LIB and cpanm installation ...

#29. Conda安装line_profiler - Shell/Bash 示例代码 - 不同编程语言 ...

寻找示例代码或问题的答案«conda安装line_profiler»? ... conda安装line_profiler. conda install -c anaconda line_profiler ... conda安装tqdm · 安装cpanm.

#30. Install Rouge and Pyrouge for python 2.7 (conda ... - 台部落

sudo cpanm XML::DOM. Step 6: Deal with Wordnet exceptions for ROUGE-1.5.5 (f**k). cd ~/rouge/RELEASE-1.5.5/data/WordNet-2.0-Exceptions/.

#31. HOWTO: Install your own Perl modules - Ohio Supercomputer ...

cpanm Math::CDF cpanm SET::IntervalTree cpanm DB_File ... requested time accuracy using XDMoD · HOWTO: Add Python packages using the conda package manager

#32. 第5 章计算资源及编程 - 生物信息学最佳实践–基础篇

因此，conda最开始是Anaconda提供的Python包安装管理工具哦。 ... 然后你直接运行cpanm Module::Name，就跟root用户一样的可以下载模块啦！或者用下面的方式在shell ...

#33. conda install help Code Example - Semeru Satu

To install a package in currently active enviroment conda install package-name. ... how to install windows 10 · conda install line_profiler · install cpanm ...

#34. BioPerl - Perl modules for biology - metacpan.org

cpanm cpanm BioPerl. CPAN shell perl -MCPAN -e shell install BioPerl. For more information on module installation, please visit the detailed CPAN module ...

#35. GenomeDK - Software-specific documentation

Different Python versions can be installed through the Conda package manager. ... and you can install new modules with cpanm command, for example:.

#36. 没有网也可以安装Conda 环境 - CSDN博客

2.4.10 Conda软件安装core dump error/Segment fault/段错误怎么办 ... 显示Bio::SearchIO: hmmer3 cannot be found 解决cpanm Bio::SearchIO::hmmer.

#37. How to install an application - MetaCentrum

4.3.2 another easy way - using Conda; 4.3.3 hard way - manual package ... cpanm -l /specified/local/directory/ GD::Graph::bars – to install Perl library and ...

#38. Updating the @INC variable during installation of a conda ...

I am trying to install a conda package of a Perl module. ... 请注意，我使用 perl ${PREFIX}/bin/cpanm cpanm I was not able to simply run it as cpanm ...

#39. Black Duck （黑鴨）軟體組成分析

Cpanm. • Conda. • Pear. • Composer. • Pip. • Packrat. • RubyGems. • SBT. DevOps 工具. 整合式開發環境. • Eclipse. • Visual Studio IDE.

#40. Guide to Installing R, Python, and Perl Packages | SCINet

For instructions on how to manage Python packages using Conda, see User-installed ... cpanm is a convenient tool to install modules in the home directory.

#41. latexindent-yaml-schema.json

sudo apt install perl sudo cpan -i App::cpanminus sudo cpanm YAML::Tiny ... You can get a conda installation for example from [conda] or from [anacoda] .

#42. Setting up new or additional languages on Code Ocean via ...

need general flexibility, start from an image with Conda these will have ... perl for Perl (add cpanm if needed); ... Installing langauges through Conda.

#43. Installing software by yourself — CÉCI - ceci-hpc.be

First of all, we discourage the use of Conda on the CÉCI clusters. ... For cpanm to install modules locally, you need to setup the environment according to ...

#44. vcf2maf - 代码天地

cpanm Archive::Zip. cpanm DBD::mysql. cpanm DBI. #c complier not found. apt-get install build-essential. conda update --all -c conda/label/ ...

#45. q2-itsxpress bbmerge error - Community Plugin Support

You need to update bbtools from within your qiime2 conda environment. ... conda-forge perl-app-cpanminus 1.7044 pl526_1 bioconda perl-archive-tar 2.32 ...

#46. 2 Linux下软件安装相关

软件安装的几个概念：环境变量、可执行属性、编译安装、Conda安装。 ... 假设~/bin已在环境变量中cd ~/bin curl -L https://cpanmin.us/ -o cpanm chmod +x cpanm ...

#47. Running conda environments in Google Colab - Local Coder

To run conda environments within google colab, you can use a %%bash magic line. Then you would have to run python again and execute your python commands.

#48. Perl cpan. org> Date: Mon, 20 Jul 2009 04:03:02 - Elektro Delta

This is the command you need to install cpanminus before you can use it to install ... etc. conda install -c bioconda/label/cf201901 perl-cpan-shell.

#49. 如何便捷的安装perl模块 - 简书

perl的话就有点麻烦，虽然可以安装perl-app-cpanminus，但是用cpanm安装模块的时候，由于环境变量的缘故，即便是在激活的conda环境中，它还是会安装 ...

#50. Error running FastTreeMP step - PhyloPhlAn - The bioBakery ...

pcre 8.44 he1b5a44_0 conda-forge perl 5.26.2 h36c2ea0_1008 conda-forge perl-app-cpanminus 1.7044 pl526_1 bioconda

#51. x86_64-conda_cos6-linux-gnu-gcc : not found - IT工具网

我无法在conda 中使用cpanm 安装模块。 cpanm --force Math::CDF --> Working on Math::CDF Fetching http://www.cpan.org/authors/id/C ...

#52. perl module install error - 菜鳥學院 - 菜鸟学院

cpanm DBD::mysqlphp #c complier not foundhtml apt-get install build-essentialmysql conda update --all -c conda/label/cf201901sql conda ...

#53. 基因結構註釋軟體PASA安裝全紀錄- IT閱讀

cpanm --mirror http://mirrors.163.com/cpan/ DBD::mysql ... conda install -c bioconda gmap conda install blat conda install fasta3 ...

#54. Conda install issues #553 - githubmemory

(funannoate) bash-3.2$ conda install funannotate Collecting package metadata ... install with cpanm Bio::Perl ERROR: DBD::SQLite not installed, install with ...

#55. CORASON.ipynb - Google Colaboratory (Colab)

conda install -y --name CORASON perl fasttree quicktree blast muscle newick_utils biopython gblocks perl-app-cpanminus conda activate CORASON cpanm SVG

#56. Module Registration Log - KBase

... Using cache ---> 1d170564ec1f Step 6/21 : RUN cpanm -f --installdeps . ... Using cache ---> ff9e5f6881c0 Step 8/21 : ENV PATH /opt/conda/bin:$PATH ...

#57. iOS

问题 I'm trying to install perl modules via cpanm inside conda environment with perl installed. For this post, I am using python 3. Set up WSL 2. pip.

#58. Linux(CentOS/Ununtu)에 Circos 설치 - 훌륭한 개발자 블로그

alias cpanm='/home/lixy/local/cpanm --mirror http://mirrors.163.com/cpan ' # -f cpanm -f Text::Format 최신 업데이트: conda를 설치한 경우 conda를 사용하여 ...

#59. 关于生物信息学：Perl模块无法通过CPAN / cpanm安装| 码农家园

Perl Module fails install with CPAN/cpanm我正在尝试安装一些perl模块，这些模块是我要安装的程序(MEME-suite)的依赖项。运行perldependents.pl可 ...

#60. Black Duck 連携可能開発ツール(Integrations tool ) - NEC

最適化済みパッケージマネージャ NuGet, Hex, Vndr, Godep, Dep, Maven, Gradle, Npm, CocoaPods, Cpanm, Conda, Pear, Conposer, Pip, Packrat, RubyGems, SBT など ...

#61. Install - quadram-institute-bioscience/seqfu Wiki

BioX::Seq::Stream , that can be installed via cpanm BioX::Seq or conda install -c bioconda perl-biox-seq . This is used by the newest scripts, and is ...

#62. x86_64-conda_cos6-linux-gnu-gcc：未找到| 经验摘录

我无法在conda 中使用cpanm 安装模块。 cpanm --force Math::CDF --> Working on Math::CDF Fetching http://www.cpan.org/ ...

#63. 在安装conda软件包的过程中更新@INC变量

I am trying to install a conda package of a Perl module. ... cpan App::cpanminus perl ${PREFIX}/bin/cpanm Data::Dump perl Makefile.

#64. 如何安装perl模块 - 徐洲更的第二大脑

之后便可以使用 cpanm Module::Name 安装任意的软件了。 ... 这个问题是因为用系统perl安装的软件被conda的perl优先查找到导致，用 perl -V 和 perl ...

#65. Install Rouge and Pyrouge for python 2.7 (conda ... - 极客分享

conda create -n py27env python=2.7 pip source activate py27env ... Step 2: Install pyrouge by conda from 3rd party ... sudo cpanm XML::DOM

#66. CentOS 7 配置指南— 脚本语言篇 - SeisMan

可以使用plenv 提供的 cpanm 命令安装Perl 模块的最新版本: ... 对于其他包，则可以利用Anaconda 提供的 conda 命令或Python 提供的 pip 命令安装， ...

#67. Hisat2 Install Linux hisat2 install linux. Install miniconda if you ...

To install this package with conda run one of the following: conda install -c ... csh ruby-full gnuplot cpanminus libssl-dev gcc g++ gsl-bin libgsl-dev apt.

#68. How to fix Perl from anaconda not installing bioperl? `Bailing ...

I tried to update conda, install bioperl through conda AND installing bioperl through cpanm as shown below. I checked to currently used Perl is the anaconda ...

#69. Using conda-forge as default channel with Anaconda to install ...

There are currently only 64 bit installers for anaconda. All that come along it will be 64bit. All modules installed will be targeted for 64 ...

#70. conda 中手动安装cpan 的模块_MrXunの博客-程序员信息网

问题描述：perl 中使用cpan 安装XML::LibXML 模块出现失败，提升x86_64-conda_cos6-linux-gnu-gcc: 没有那个文件或目录错误原因：在conda 中的perl 会自动调用conda ...

#71. Geoip2 download - auf konten-vergleich.de

2; To install this package with conda run: conda install -c conda-forge geoip2 ... The file is only downloaded once (Unless it isDownload. cpanm.

#72. aaa - Opera Fashion Mag

conda activate gcc $ conda install gcc_linux-64 $ conda install gxx_linux-64 ... --add channels conda-forge # Install cpanm conda install perl-app-cpanminus ...

#73. conda-build Documentation

Building a conda package requires installing conda-build and creating a conda recipe. You then use the conda build command to build the conda ...

#74. Anaconda is bloated — Set up a lean, robust data science ...

Anaconda is bloated — Set up a lean, robust data science environment with Miniconda and Conda-Forge. In this tutorial, I will describe a process ...

#75. Anaconda的基本使用 - 迷途小书童

Anaconda 是一个用于科学计算的python 发行版，支持Windows, Linux 及Mac 系统，提供了包管理的功能，可以非常方便的解决python 的多版本并存, ...

#76. Shapely安裝：OSError：[WinError 126]無法找到指定的模塊

PackageNotFoundError: Package not found: Conda could not find '. 我正在使用Windows 10（64位）上的Python 3.6.0（Anaconda3）。請幫忙。

#77. Black Duck: Detectors Introduction - Synopsys Community

Below is the list of package manager ecosystems that Synopsys Detect supports. Each is assigned a detector. Bazel; Bitbake; Conda; Cpan ...

#78. CentOS 7で作るネットワークサーバ構築ガイド 1804対応第2版

1902–17. el 7 base perl-App-cpanminus.noarch 1.6922–2. el 7 base perl-AppConfig.noarch ... 2 of > Z is - JViño, C & 3 J } &# L Q \, , ; ; (J - (< anaconda ...

#79. CentOS 7で作るネットワークサーバ構築ガイド

1902–17. el 7 base perl-App-cpanminus.noarch 1.6922–2. el 7 base ... o, of > Z E – Juž, C 35 %, C P & # U C L # 3 (C C C anaconda & HJJ & h 3 #f, ...

#80. x86_64-conda_cos6-linux-gnu-gcc：未找到 - 堆栈内存溢出

我无法在conda 中使用cpanm 安装模块。错误是但是x conda cos linux gnu gcc 在路径中cpanm 或conda 可能有什么问题我在Ubuntu . 中使用miniconda.

#81. How to install perl module - Programmer Sought

Can be used later cpanm Module::Name Install any software. ... that the perl search path of conda is lower than the path I installed for the system perl.

#82. Updating the @INC variable during installation of a conda ...

I am trying to install a conda package of a Perl module. ... I was not able to simply run it as cpanm , see Can you rely on the shebang of an installed ...

關於 cpanm conda ，我們在網路上蒐集到這些相關的討論、資訊與評價

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